PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014094m
Common NameCICLE_v10014094mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 1128aa    MW: 126877 Da    PI: 7.312
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014094mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.31.6e-052273156
                     HHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56
                     e LA+ l+Lt +qV++WF  +R ++k
  Ciclev10014094m  2 EGLAAALDLTYKQVRTWFIEKRRRDK 27
                     679*******************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000867.06E-4127No hitNo description
PROSITE profilePS500719.977129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-5227IPR009057Homeodomain-like
SMARTSM005711.5E-10346405IPR018501DDT domain
PROSITE profilePS5082712.009346405IPR018501DDT domain
PfamPF027915.2E-11347402IPR018501DDT domain
PfamPF156123.4E-6629666IPR028942WHIM1 domain
PfamPF156135.7E-10759832IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1128 aa     Download sequence    Send to blast
MEGLAAALDL TYKQVRTWFI EKRRRDKGDN GIVIPSSSSK KLKGFHGRNR LGVVSAKIVK  60
KQDSLIHNKH LSLMVCNGTG KKKNAVSVLQ DLLTPDYILK KVFRKDGPSL GVEFDSLPSK  120
AFFHSKDSIN SCPPLQENQT AKRKRKVSIH DELDHQECCT NTDHVRKHGM GKGLMTAWRV  180
MNPNGGTVPT GIDVADRQVT VVPQMATPLS QKPPLRKKRA QQIVSLLKQR RLANNLQNKR  240
KPVAKGRQVK LDKGERLRQP NKEKCELAPD SVISQERLDQ IAMLVDDEEL ELRELEVGPN  300
PPTCCDHIST KGLHGCSLCR DLLAKFPPNS VKMKQPFGTQ PWDSSPETVK KLFKVFHFLC  360
TYAGIVDICS FTLDEFAQAF HDKDSMLLGK IHVALLKLLL SDVEMELGRG CPPHLSVSCK  420
FLALLHSVEN QEFFVEFWNK SLNPLTWTEI LRQVLVAAGF GSKQGSSRKE SLSKEMILML  480
KYGLRPGTLK GELFRILLEQ GNNGSKVCQL ARSSQIAELN LESTTEEVEL LISSTLSSDI  540
TLFEKIASST YRLRINTSKE ADDFESDAED IGSVDDNSDD DDTCSNRDDS ECNSENQRQR  600
RPKYLNCRKS ENNMLTVYME IDESHRGDVW LSGLMEGEYS DLTIDEKLNA LVGLIDLVSA  660
GSSIRMEDPT KAIAESVPSV RHYGSGAKIK RALPNQHSLP RPSWVHAGDF HGVRETNTSR  720
ELHPLDSFSL ISKSCGKEKS SSVKDAKATE VSTDLHPMQS IYLGSDRRYN RYWLFLGPCN  780
EYDPGHKRVY FESSEDGHWE VIDTEEALRA LLSVLDDRGR QEALLIESLE KREAFLCQAM  840
SSGLVNNTEI RHVAQSDQSE LDIVREDSSS PVSDVDNNLA LSEIGKESLP SCGAIVLDVG  900
KKGEEQHRMW SRLQEFDAWI WNSFYLNLNA VKHGKRSYLD ALARCERCHD LYWRDEKHCK  960
ICHTTFELDF DLEERYAVHA ATCRGKGDHL VSKHKILSSQ LQSLKAAVHA IESVMPEDAL  1020
VGAWTKSAHK LWVKRLRRTS SLAELLQVVA DFVSAINEGW LYQWNVQIAD TVMEEIIAVF  1080
PTMPQTSSAL ALWLVKLDAI IAPYLERVNS GKEDARMRCR GKQALVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044691e-51AP004469.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15D01, TM0004a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447893.10.0hypothetical protein CICLE_v10014094mg
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLV4TL280.0V4TL28_9R
STRINGVIT_19s0085g00350.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator