PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013728m
Common NameCICLE_v10013728mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27186.3 Da    PI: 9.9322
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013728mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.86e-181150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+n+s r+ tf kR++g+lKK +ELS+LC+++++ iifs+
  Ciclev10013728m 11 ISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSP 50
                     9**************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.605149IPR002100Transcription factor, MADS-box
CDDcd002661.99E-24285No hitNo description
SuperFamilySSF554555.1E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTRKKVKLAY ISNDSARKAT FKKRKKGLLK KVSELSTLCG IDACAIIFSP YDSQPEVWPS  60
PLGVQRVLSQ FKKMPEMEQS KKMVNQDSFL RQRIAKANEQ LKKQRKDNRE KEITQVMFQS  120
LTGKALLNLN MMDLNDLGWL IEQNLKEICK RMETLSKGTS THNSSNYGVV KNNGEASQQQ  180
VDKSSGFDQM SMEAMQKQQW LLDLMNPQEH MGFGGEEIMY PFGESSHSTL WSNPFYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYISNDSARKATFKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428341.11e-178agamous-like MADS-box protein AGL80
RefseqXP_006480389.11e-178agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-69AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2H5NT821e-176A0A2H5NT82_CITUN; Uncharacterized protein
TrEMBLV4SWL01e-176V4SWL0_9ROSI; Uncharacterized protein
STRINGXP_006480389.11e-177(Citrus sinensis)
STRINGXP_006428341.11e-177(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]