PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013435m
Common NameCICLE_v10013435mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 186aa    MW: 21519.8 Da    PI: 6.6777
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013435mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1308.1e-4178180299
            NF-YC   2 lksfwekq...iek..atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                      ++sfwe+q   ie+  ++ ++nh lPlarikk++k+ e+vkm +a++P++++kace+fi+eltlr+wl++e+ krrtl+++dia a+   + fd
  Ciclev10013435m  78 VQSFWEQQksdIENatTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFD 171
                      689****98886651145789************************************************************************* PP

            NF-YC  91 flvdivprd 99 
                      fl+d vp d
  Ciclev10013435m 172 FLIDFVPYD 180
                      ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001251.2E-1758167IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.37E-2668173IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.3E-30102178IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
TPSLTRKLHK RIIMRRPKVD LNVSEDDFTP SSTPSQDAAP VHNFMPMTPF MLPSHQPTEE  60
DEEEAHSLAL MMKQRQLVQS FWEQQKSDIE NATTESLRNH LLPLARIKKV MKSREEVKMT  120
TADSPAVFAK ACEMFIMELT LRAWLQTEDG KRRTLQRCDI ARALRLDELF DFLIDFVPYD  180
CRQVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-336917810118HapE
4g92_C2e-336917810118HapE
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430712.21e-123nuclear transcription factor Y subunit C-2
SwissprotQ8LCG71e-37NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLV4ST921e-134V4ST92_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006430712.11e-134(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1809079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-40nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]