PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013420m
Common NameCICLE_v10013420mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 292aa    MW: 32241.8 Da    PI: 6.7897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013420mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-10204247755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Ciclev10013420m 204 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 247
                      5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-12198254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13199256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-11199251No hitNo description
SMARTSM003539.9E-12203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7205247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MALARETCAF KENVYGDLSS PGSKKAPGFV KSIGISNTSS PSSANSNGYE FHNAEEARDS  60
LINFKSGHDH FMHANASNLL SFEQNETKDD EYSMWEGNFN QINQKYSSDH RLMEDFNCFD  120
TASNYGFMIN NSARDCHGDW LYTEATAVTD TILESGSQDA SSSLKRPNTG ESMQAVKKQC  180
AIAATKKTNN KQKTSAPPKD PQSIAAKNRR ERISERLKIL QELVPNGSKV DLVTMLEKAI  240
SYVKFLQLQV KVLATDEFWP VQGGKAPDIS QVREAIDAIL SSQRDRSSSS K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430635.10.0hypothetical protein CICLE_v10013420mg
SwissprotQ9FJ006e-65BH086_ARATH; Putative transcription factor bHLH086
TrEMBLV4SXU20.0V4SXU2_9R
STRINGPOPTR_0005s14360.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-61RHD SIX-LIKE 1