PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012453m
Common NameCICLE_v10012453mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 273aa    MW: 30879.5 Da    PI: 7.0042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012453mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09165212455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+++Er RR++iN+++  L++l+P +    +k +  a +Le+ ++Y++sLq
  Ciclev10012453m 165 SHSIAERVRREKINKKMRCLQDLVPGC----HKDMGMAGMLEEIINYVHSLQ 212
                      8*************************9....777****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16159223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-9159216No hitNo description
Gene3DG3DSA:4.10.280.109.6E-17161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.932161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-8167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MADFRENTQS LRASQAFTEL GVNMEMVKHF AELKPSMLEY FNTPNFSLAT PLAHQQPEFL  60
AGCSYNNSFS NFQTDSRIVV PRVHTVRGNE DVLYESSRRE VTEQSTSISK TMCSSASTSE  120
TQGDTYKNKK IRSRRGKKVS SNEKEEGNPE RIIHVRAKRG QATDSHSIAE RVRREKINKK  180
MRCLQDLVPG CHKDMGMAGM LEEIINYVHS LQNQVEFLSM ELAAACSSND LNIETESSRK  240
TQGTNSHEAL EMEIWAKEAY GEYTSFHSTW SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430772.10.0hypothetical protein CICLE_v10012453mg
TrEMBLV4STF10.0V4STF1_9R
STRINGPOPTR_0005s15590.12e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17213810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-48BR enhanced expression 3