PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012300m
Common NameCICLE_v10012300mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family RAV
Protein Properties Length: 306aa    MW: 34607.8 Da    PI: 6.6231
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012300mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.6e-133179155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a+++++g
  Ciclev10012300m 31 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFIEEEEAARVYDTAALRFRG 79
                     89****9888.8*********3.....5*************************98 PP

2B391.56.1e-29164250183
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+kvltpsdv+k++r+v+pk+ ae+h    +++  +++ l +ed++ ++W+++++y+ +s++yvltkGW++Fvk++g+k+gD+v F 
  Ciclev10012300m 164 FEKVLTPSDVGKLNRMVIPKQQAEKHfalsSEIASKGVLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKGVKAGDTVSFW 250
                      99*************************9997777899************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-73179IPR001471AP2/ERF domain
CDDcd000182.12E-263189No hitNo description
SuperFamilySSF541712.22E-163189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-203288IPR001471AP2/ERF domain
PROSITE profilePS5103219.7443287IPR001471AP2/ERF domain
SMARTSM003808.0E-283293IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-36160268IPR015300DNA-binding pseudobarrel domain
CDDcd100179.04E-27162262No hitNo description
SuperFamilySSF1019363.4E-28162252IPR015300DNA-binding pseudobarrel domain
PfamPF023628.8E-26164251IPR003340B3 DNA binding domain
SMARTSM010194.1E-18164267IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098164268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASNSSSVDL DHDHNLSENG IDAESKKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF  60
IEEEEAARVY DTAALRFRGQ NAITNFRTSL ETDDEDDYME KIFLSSHSKA EIVDMLRKHT  120
YKHELEQSKQ NYACVGISCY NNSSGFSDLF GSNCFQETPV EFLFEKVLTP SDVGKLNRMV  180
IPKQQAEKHF ALSSEIASKG VLLNFEDSTQ KVWRLRYCYW SSSQSYVLTK GWSRFVKEKG  240
VKAGDTVSFW RSIVGSNSKL FIDCKLQQNG NGSGFEEMQS QVPNIGVVRL FGVNILEDPN  300
NLCCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4216026510115DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430818.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822801e-107RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLV4S9690.0V4S969_9ROSI; Uncharacterized protein
STRINGXP_006430818.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-110related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]