PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011194m
Common NameCICLE_v10011194mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 704aa    MW: 77617.9 Da    PI: 6.9888
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011194mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23122223199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + 
  Ciclev10011194m 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RA 211
                      89****************************996555555..89***********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Ciclev10011194m 212 ENGDLCVGIRRA 223
                      88999****997 PP

2Auxin_resp112.15.5e-37292375183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
  Ciclev10011194m 292 AATLAANRQPFEVVYHPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVSDPLYWPDSPWRLLQ 375
                      68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-29114225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-37114225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-21121222No hitNo description
PfamPF023628.9E-22122223IPR003340B3 DNA binding domain
SMARTSM010191.7E-21122224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112122224IPR003340B3 DNA binding domain
PfamPF065075.2E-32292375IPR010525Auxin response factor
PROSITE profilePS5174521.636617697IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVNSRV FYFPQGHAEH ACGPVDFRSC  60
RRIPPYILCR VSAIKFMADP ETDEVYAKIK LVPVSNNDPD FDNDDGIAGI HSNETQDKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PEVTSGWNGN  240
CVTPYGGFSA FLREDDNKLM RNGIGNVNGP SSNNGNNLMA KGKVRPESVI EAATLAANRQ  300
PFEVVYHPRA STPEFCVKAS MVKAALQIRW CSGMRFKMAF ETEDSSRISW FMGTISSVQV  360
SDPLYWPDSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKSRLPQ  420
PPDFPLDGQL PMPSFSGSLL GPNSPFGCLP DNTPAGMQGA RHAHYGLSLS DLHLNKLQSG  480
LSPAGFPPFD RAAKPTRASN SPILQKPSMS ENISCLLTMS HSTQPSKKAD DLKTPQLVLF  540
GKPILTEQQM SHSCSGDTVS PVRTGNSSSE GNLDKLTNFS DGSGSALQQQ GLPDRSFCEV  600
FQWYKDNRQE TEPSLETGHC KVFMESEDVG RTLDLSLLGS YDELYKKLAE MFGIENAETL  660
SHLLYRDVTG AVKHIGDEPF SDFMKTARRL TILMDSGSDN VGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-811839651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428777.10.0hypothetical protein CICLE_v10011194mg
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV4SMW10.0V4SMW1_9R
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16