PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006940m
Common NameCICLE_v100069401mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 281aa    MW: 31525.7 Da    PI: 7.9112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006940mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1381125755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + Er+RR ++N++f+ Lr l+P++    + K + a+++  A+eYIk+Lq
  Ciclev10006940m  81 ISERQRRVEMNDKFAVLRNLVPNP----NNKGDRASVVGDACEYIKELQ 125
                      67*********************9....99******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.11974124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-1677140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-1177128No hitNo description
SMARTSM003539.3E-1280130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1481133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1081125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGISVTNSKP QSSLYDPIFH SNLPSQQPPL FGEFFQSSNY EDGNGGHFNN CVLDEFNGDI  60
GMAFTGTKRV KATGKAKKPI ISERQRRVEM NDKFAVLRNL VPNPNNKGDR ASVVGDACEY  120
IKELQRSINE LKPLVERKRF AREIRSNNER HNIEGCDHDM KPAPLVDPNN TASLRSSWLQ  180
RKSKDIEIDV RIVDDEVTVK ILQRKKIDNS LLFLSKVFDE MQLDLQHVAG GHIGDYYSFL  240
LNSKIHEGSC VYAGAIVNKL IEIMDRQYAA ASIAPINCSN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421646.10.0hypothetical protein CICLE_v100069401mg, partial
TrEMBLV4SD390.0V4SD39_9R
STRINGVIT_15s0107g00380.t012e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.24e-55bHLH family protein