PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004036m
Common NameCICLE_v10004036mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 362aa    MW: 41300.3 Da    PI: 6.6879
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004036mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-1075106334
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                      + k +rr+++NReAAr+sR+RKka++++Le  
  Ciclev10004036m  75 SEKTQRRLAQNREAARKSRLRKKAYVQQLESS 106
                      6799*************************984 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-767121No hitNo description
SMARTSM003382.1E-573131IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.34775117IPR004827Basic-leucine zipper domain
PfamPF001708.1E-876110IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-677112No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
PfamPF141448.8E-29164238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSSPSSQLAT LRRMSIYEPF HQISMWGDTF HGDASPNTGS STIVQVDTRL DNQTEYLSHN  60
SVEPSRSDQE ANKPSEKTQR RLAQNREAAR KSRLRKKAYV QQLESSRLKL AQLEQELDRA  120
RRQGIYTGST SDGSHFGLSG NINPGITAFE MEYSHWVEEQ NRQIYELRNA LQKHITDIEL  180
RILVENGLNH YNNLFRMKAD AAKADVLSLI SGMWRTSTER FFQWIGGFRP SELLNILMPQ  240
LEPLTEQQLI DVCNLRQSSQ QAEDALQQGI DKLQQSLVQI ITEDQSSSEI YQSQMVAAAE  300
KLEALESFVN QADHLRQQTM QQMYRVLTTR QAARALLALG EYFHRLRALS SLWAAQHLES  360
A*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434079.10.0transcription factor TGA7 isoform X2
SwissprotQ93ZE21e-162TGA7_ARATH; Transcription factor TGA7
TrEMBLV4V5P20.0V4V5P2_9ROSI; Uncharacterized protein
STRINGXP_006434079.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-155bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]