PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002193m
Common NameCICLE_v10002193mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 264aa    MW: 29111.8 Da    PI: 6.4161
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002193mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.99.5e-56821851101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql+sfw++q   iek++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdf
  Ciclev10002193m  82 QLQSFWANQyqeIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDF 175
                      89******99999********************************************************************************* PP

            NF-YC  92 lvdivprdel 101
                      lvdivpr++l
  Ciclev10002193m 176 LVDIVPREDL 185
                      *******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-3373176IPR009072Histone-fold
PfamPF008081.7E-21104167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-37105182IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDRQGHGGQP TSMGLVGSGA QVPYGTNPYQ QNQMAGGPNP GPAVTSVGAI QSTSQPGGAQ  60
LAQHQLAYQQ IHHQQQQQLQ QQLQSFWANQ YQEIEKVNDF KNHSLPLARI KKIMKADEDV  120
RMISAEAPVI FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV  180
PREDLKDEVL ASIPRGTLPV GGPPDMPPYC YMPTQHASQV GSAGMIMGKP VMDPAIYAQQ  240
SHPYMGQQMW PQGADQQQSP SDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-418318219119HapE
4g92_C4e-418318219119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.41090.0abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433280.10.0hypothetical protein CICLE_v10002193mg
RefseqXP_006433281.10.0hypothetical protein CICLE_v10002193mg
RefseqXP_006433282.10.0hypothetical protein CICLE_v10002193mg
RefseqXP_015384040.10.0PREDICTED: nuclear transcription factor Y subunit C-9 isoform X1
RefseqXP_015384041.10.0PREDICTED: nuclear transcription factor Y subunit C-9 isoform X2
SwissprotQ8L4B22e-89NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A067F7P60.0A0A067F7P6_CITSI; Uncharacterized protein
TrEMBLV4T0760.0V4T076_9R
STRINGVIT_14s0128g00250.t011e-142(Vitis vinifera)
STRINGGLYMA19G42460.11e-142(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-84nuclear factor Y, subunit C9