PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001849m
Common NameCICLE_v10001849mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 323aa    MW: 33496.6 Da    PI: 8.4957
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001849mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-3938161289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      + +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  + s +ss+s+s s+      
  Ciclev10001849m  38 TLAKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNISLRSSGSSSLSApaskss 131
                      5689*************************************************************99998887445555554422222233333 PP

              TCP  89 .............................k 89 
                                                   +
  Ciclev10001849m 132 lhsaaaalalynnttnnninsggffcgafQ 161
                      555555666666665554433333333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3744193IPR005333Transcription factor, TCP
PROSITE profilePS5136927.4894498IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKIMEHNNNN NQTTASSNNS NPNTTTTTTS TVSAATKTLA KKPSKDRHTK VDGRGRRIRM  60
PAVCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIATTG TGTIPANFST LNISLRSSGS  120
SSLSAPASKS SLHSAAAALA LYNNTTNNNI NSGGFFCGAF QQQQQQQLLY NIHETAAATA  180
SACASSSSSS SSASAAAAVA APAAAMWAVA PAAASNGGNG FWMLPEAQMW TFPAHYSGLG  240
RLSSVQMGGH QQQLGVGVLA ESLNNNMGVL GGGVGSNNAY RAPGLAMNIF GQNRQENNND  300
NDNNNNNNQQ TTQASNSGDE ES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434590.10.0transcription factor TCP23
SwissprotQ9LQF01e-62TCP23_ARATH; Transcription factor TCP23
TrEMBLV4T8L50.0V4T8L5_9ROSI; Uncharacterized protein
STRINGXP_006434590.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-29TCP family protein