PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001683m
Common NameCICLE_v10001683mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 350aa    MW: 39487.4 Da    PI: 4.4379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001683mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-11184227654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Ciclev10001683m 184 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILADTIDYMKEL 227
                      589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.415178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15182241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-12184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9184227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-5185232No hitNo description
CDDcd048730.00142275316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEFSEHGFLE ELLALRRDAY TWDTSIPAEM NQIFSDGNWI YDCFDENPAA FSPNSFSAPI  60
HQQDHFNYNN FFNEAAYCPY GDDQLSAPQL TDSSSMNTLD SHTHTPPSFP IQEEAPLSMM  120
ELDGEEPNNL LADEFQNLEM LQNCFKVEPV HESPETLPVF NMGTDCLERK SRNKKLGGQP  180
SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILADT IDYMKELLDK ISSLQQEIQA  240
GSNNLETGIF KDVKPNEIVV RNSPKFDVER TNMDTRVEIC CAGKPGLLLS TVTSLEALGL  300
EIQQCVISCF NDFAMQASCS EGVEQRETLS CEDIKQALFR NAGYGGKCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186193ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433742.10.0hypothetical protein CICLE_v10001683mg
SwissprotQ9LSL12e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A067GRJ60.0A0A067GRJ6_CITSI; Uncharacterized protein
TrEMBLV4T1H30.0V4T1H3_9R
STRINGGLYMA14G36370.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-83beta HLH protein 93