PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_48060
Common NameKK1_044997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22809.4 Da    PI: 10.1114
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_48060genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.9e-151151343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+s+r  t+ kR+ng++KK  E+ +LC++e++ ii+ ++
  C.cajan_48060 11 ITNDSKRRATLKKRKNGLIKKIDEIGILCGIEACAIIYTPD 51
                   89************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.862161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-22183IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-16160IPR002100Transcription factor, MADS-box
CDDcd002668.64E-26283No hitNo description
PRINTSPR004041.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MARKKVDLTY ITNDSKRRAT LKKRKNGLIK KIDEIGILCG IEACAIIYTP DDPQLEVCPS  60
DQGVQNVLSR FRQVSELEQS KKMLSQESFL SEKIVKAQAQ LKKLSNGIKK KETTLLMFQY  120
LNAGHIFNNA NMNDLNNISR LIEQNLGEIE RKNNISQVQE VTPNVKNGGV TVTHRKQTIM  180
NHVHGLETNV MPCKTTFSLW P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTYITNDSKRRATLKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_48060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207324.11e-148agamous-like MADS-box protein AGL80
TrEMBLA0A151QUR71e-147A0A151QUR7_CAJCA; Agamous-like MADS-box protein AGL80
STRINGXP_007146077.12e-81(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-38AGAMOUS-like 80