PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_46899
Common NameKK1_043502
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22606.2 Da    PI: 10.3322
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_46899genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161151343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+s+r++t+ kR+ng++KK  E+S+LC++e++ ii+ ++
  C.cajan_46899 11 ITNDSKRKTTLRKRKNGLIKKIGEISILCEVEACAIIYTPD 51
                   89************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.142161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22183IPR002100Transcription factor, MADS-box
CDDcd002664.26E-27283No hitNo description
PRINTSPR004042.6E-10323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MARKKVDLTY ITNDSKRKTT LRKRKNGLIK KIGEISILCE VEACAIIYTP DDPQPEVCPS  60
NMGVQNVLSR FRRVSEFEQN KKMLSQESFL SQRIIKAQAQ MKKLSNATRK KEITLLMLQY  120
LNAGNIFDNA NMIDLNDISR LIDKNLGEIE RKKNLSRVQE MTPNVENGRI TMTQENQAIM  180
NNVQGLKTNV DAMQKQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTYITNDSKRKTTLRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_46899
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125686.11e-142agamous-like MADS-box protein AGL80
TrEMBLA0A151QYQ51e-141A0A151QYQ5_CAJCA; Agamous-like MADS-box protein AGL80
STRINGXP_007146077.13e-84(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-40AGAMOUS-like 80