PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_44106
Common NameKK1_043884
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 321aa    MW: 35093.9 Da    PI: 8.7802
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_44106genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-40155232178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +CqvegC++ l +ak+yhrrhkvCe+hskap v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  C.cajan_44106 155 RCQVEGCHVALLNAKDYHRRHKVCEMHSKAPRVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 232
                    6**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-34150217IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.351153230IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-38154235IPR004333Transcription factor, SBP-box
PfamPF031108.0E-32156229IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MFCLGNRDLN NGNAFAWDSW EATTNDNNNN TNNNNNGSRL LNAFHGEGSA AGLANALMFL  60
PQNGGVLRQR QHAYGGEGSS HSHSHSHSHV HSDPHLTCLK LGKRHYFEDA NASGGGSGGV  120
APGLALGDKR GKGCSAGAAA AKAVGFTAAA ATVPRCQVEG CHVALLNAKD YHRRHKVCEM  180
HSKAPRVVVL GMEQRFCQQC SRFHVVSEFD DSKRSCRRRL AGHNERRRKS SHDSVARNSS  240
QGGCALSLLS SRSDSWLSPS DLSTRCSAAL RELIAENRAA IMARQFVSDR DWHFHHHAAE  300
EFKEIQPESN YLPQQMFPQT Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291562291184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_44106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-71AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206538.10.0squamosa promoter-binding-like protein 7
SwissprotQ01JD11e-57SPL7_ORYSI; Squamosa promoter-binding-like protein 7
SwissprotQ7XT421e-57SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A151QXQ80.0A0A151QXQ8_CAJCA; Squamosa promoter-binding-like protein 7
STRINGGLYMA01G15134.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-35squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]