PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_42711
Common NameKK1_044253
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13527.9 Da    PI: 10.4865
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_42711genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF466.6e-151151343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+s+r  t+ kR+ng++K   E+S+LC++e++ ii+ s+
  C.cajan_42711 11 ITNDSKRRATLKKRKNGLIKNIDEISILCGIEACAIIYTSD 51
                   89***********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.498150IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-21182IPR002100Transcription factor, MADS-box
CDDcd002662.37E-23282No hitNo description
PRINTSPR004043.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MARKKVDLTY ITNDSKRRAT LKKRKNGLIK NIDEISILCG IEACAIIYTS DDPQPKVCPS  60
DQGVQNVLSR FRRVSELEQS KKILSQESFL SEKIVKAQAQ LKKLSNGIKK KETTLLMFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTYITNDSKRRATLKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_42711
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207324.19e-75agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-31AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A151QWW75e-80A0A151QWW7_CAJCA; Agamous-like MADS-box protein AGL80
STRINGXP_007146077.14e-56(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-34M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]