PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40694
Common NameKK1_044456
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 637aa    MW: 69478.6 Da    PI: 4.9266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40694genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12458503454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  C.cajan_40694 458 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 503
                    799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-5772252IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.51E-15457507No hitNo description
SuperFamilySSF474593.01E-18457522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18458523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10458503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-16460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MTEYRSPPTM NLWTDDNSSV MEAFMSSTDL SSLWLAPPQS AASTTTPGPD TTRAPPPPPP  60
SQSQSLLNQE TLQQRLQTLI EGARESWTYA IFWQSSYDYS SGASLLGWGD GYYKGEEDKG  120
KGKAPKTTSL AEQDHRKKVL RELNSLISGP SASPDDLDEE VTDTEWFFLV SMTQSFVNGT  180
GLPGQAFFNS SPVWVAGADR LSESACERAR QGQVFGLQTL VCIPSANGVV ELASTEVIFQ  240
NPDLMNKVRD LFNFSNPDAG SWPLNCVATD QGENDPSSLW LNPSSSVEIR DSAVAPASAN  300
ATVNKALQFE TPGSSTLTEA PSVVHVPHGN AQHPSQNNKG FFPRELNFSS SLKPESGEIL  360
SFGESKKSLF PAVTVEEKNK RSSTVSRSTI DDGMLSFTSG VILPASNMKS AATGGDSDHS  420
DLEASVVKEP DGGRVVEPEK RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV  480
VPNVSKMDKA SLLGDAISYI NELKSKLNGL ESEKGDLEKQ LDSAKKELEL TVTTKNPPPP  540
PPPENEADKT TAMLVDLDID VKIIGWDAMI RIQCSKKNHP AARLMAALKE LDLEVHHASV  600
SVVNELMIQQ ATVNMGNRFY TQEQLLVALS SKVGDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-72642551195Transcription factor MYC3
4rqw_B2e-72642551195Transcription factor MYC3
4rru_A7e-726724843227Transcription factor MYC3
4rs9_A2e-72642551195Transcription factor MYC3
4ywc_A7e-726724843227Transcription factor MYC3
4ywc_B7e-726724843227Transcription factor MYC3
4yz6_A2e-72642551195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439447KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509886.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A151QWJ50.0A0A151QWJ5_CAJCA; Transcription factor MYC2
STRINGGLYMA01G12740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein