PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40661
Common NameKK1_041091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20027.3 Da    PI: 10.0631
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40661genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.4e-161151343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+s+r++t+ kR+n ++KK  E+S+LC++e++vii+ ++
  C.cajan_40661 11 ITNDSKRKTTLRKRKNVLIKKIGEISILCEVEACVIIYTPD 51
                   89************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-21183IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.203161IPR002100Transcription factor, MADS-box
CDDcd002661.73E-25283No hitNo description
PRINTSPR004043.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MARKKVDLTY ITNDSKRKTT LRKRKNVLIK KIGEISILCE VEACVIIYTP DDPQPEVCPS  60
NMGVQNVLSR FRRVSEFEQN KKMLSQESFL SQRIIKAQAQ MKKLSNEIRK KEITLLMLQY  120
LNAGNIFDNA NMIDLNDISR LIDKNMGEIE RKNSISQVQE MTQNVENGRI TMT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTYITNDSKRKTTLRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125686.11e-116agamous-like MADS-box protein AGL80
TrEMBLA0A151R5Q61e-122A0A151R5Q6_CAJCA; Agamous-like MADS-box protein AGL80
STRINGXP_007146077.17e-79(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-39AGAMOUS-like 80