PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_38992
Common NameKK1_035470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YC
Protein Properties Length: 155aa    MW: 17867.1 Da    PI: 5.6828
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_38992genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC139.11.2e-4357155196
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql + w+kq   ie++t+f+ h+lPla+ikki+k+dedv+misaeaP++++kace+fi +lt r+w +a++n+rrtlkk di++a+++td+fdfl+
  C.cajan_38992  57 QLDNVWAKQykeIEETTNFNTHSLPLAKIKKIMKFDEDVRMISAEAPIVFAKACEMFIQDLTTRAWANADNNNRRTLKKMDITSAISKTDVFDFLL 152
                    68899*9999899*********************************************************************************** PP

          NF-YC  94 div 96 
                    div
  C.cajan_38992 153 DIV 155
                    *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.36E-315151IPR009072Histone-fold
PfamPF008083.5E-2079142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.3E-3380155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDQNQHGEAT REVGPPAHTN PPTQTAGPSN PSFYSREQQY VPPQYMYQLQ QNQLQQQLDN  60
VWAKQYKEIE ETTNFNTHSL PLAKIKKIMK FDEDVRMISA EAPIVFAKAC EMFIQDLTTR  120
AWANADNNNR RTLKKMDITS AISKTDVFDF LLDIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-335115512117HapE
4g91_C2e-335115512117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634043.11e-58PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG73e-45NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A151RKW11e-115A0A151RKW1_CAJCA; Nuclear transcription factor Y subunit C-2
STRINGGLYMA08G15700.13e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-37nuclear factor Y, subunit C3