PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36448
Common NameKK1_038670
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18338.3 Da    PI: 9.7778
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36448genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.4e-151150342
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   i++++ r+vt+ kR++g++KK +EL +LC++ ++ ii s+
  C.cajan_36448 11 ISDDTARKVTYKKRKKGVIKKVSELTILCGIPACAIISSP 50
                   99***********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.484149IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-23182IPR002100Transcription factor, MADS-box
CDDcd002662.12E-15284No hitNo description
PRINTSPR004041.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MARKKMKLAY ISDDTARKVT YKKRKKGVIK KVSELTILCG IPACAIISSP FDSQPEVWPS  60
PEGAKEVIQR YLNASVLDQS KNVNQESFIM QRIVKTRDQL KKQRHDNDEK EMNLSLFKYM  120
QGEPLPNTAE ELKQLDKLIE KNLKEIENKL AALNCEASIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKMKLAYISDDTARKVTYKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202577.11e-115agamous-like MADS-box protein AGL80
TrEMBLA0A151RBG61e-113A0A151RBG6_CAJCA; MADS-box transcription factor PHERES 2
STRINGGLYMA10G28320.11e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.15e-33M-type_MADS family protein