PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36071
Common NameKK1_036339
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 297aa    MW: 33656.1 Da    PI: 9.2629
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36071genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36251172103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i
  C.cajan_36071  25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEI 111
                    9*****************************************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k++
  C.cajan_36071 112 HRRKTA 117
                    ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.2E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MALLLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
QGSMNQHSHL GDNERLRRSN NMLLSELAHM KKLYNDIIYF VQNHVKPVAP SNSYSSSLLL  180
SNTPSATPIS SANVLMMQRP MNQLLGYYSS NPKQGTAQPQ PQNYVVNSPT NTSRSSITIV  240
EGHSSNGNNC KTKLFGVSLQ SKKRVHPDYG SNSETNKARL VLEKDDLGLN LMPPSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D3e-222111626131Heat shock factor protein 1
5d5v_B3e-222111626131Heat shock factor protein 1
5d5u_B3e-222111626131Heat shock factor protein 1
2ldu_A3e-222111717123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3369551e-174DQ336955.1 Glycine max cultivar Williams 82 clone BAC gmw1-52d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163251.11e-151PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-101HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A151RI740.0A0A151RI74_CAJCA; Heat stress transcription factor B-4
STRINGAT1G46264.12e-98(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-95heat shock transcription factor B4