PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_34456
Common NameKK1_037927
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 255aa    MW: 29232.7 Da    PI: 5.8269
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_34456genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.73.9e-15950142
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   kri+n++ r++tf++R++g+ KK +E ++ C++e+++i+ + 
  C.cajan_34456  9 KRISNERSRKTTFIQRKKGLTKKISEFCTICGVEACLILHAD 50
                   79************************************9775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.666147IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-13162IPR002100Transcription factor, MADS-box
CDDcd001201.41E-17246No hitNo description
SuperFamilySSF554555.76E-18279IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-6323IPR002100Transcription factor, MADS-box
PfamPF003199.5E-141048IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKVTFKR ISNERSRKTT FIQRKKGLTK KISEFCTICG VEACLILHAD GNGDTGLTTW  60
PQDSTVVHSI IQKYEQSKNE GSQETFEIQD FFENRKKMVE AEISKVRKEI TDIKYPTWNP  120
CIINMEEEHL RAFLAHVDAK IGVCEQRINM IKNKHQSEAN SDFMQNMAHF HPNQIIPTPV  180
EPVSENNMSV KFTNSSNQFG CVSNHGINMQ QGDAFHGGDS VIWANELADF EKWFNELDDC  240
SNQQDDRATQ FEESF
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_34456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124946.10.0agamous-like MADS-box protein AGL82
TrEMBLA0A151RE420.0A0A151RE42_CAJCA; MADS-box transcription factor PHERES 2
STRINGGLYMA19G07162.17e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-21M-type_MADS family protein