PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33410
Common NameKK1_030161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 304aa    MW: 34943.2 Da    PI: 8.6935
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33410genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36251162102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i
  C.cajan_33410  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEI 111
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k+
  C.cajan_33410 112 HRRKT 116
                    ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.9E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALLLDNCES ILLSLDTHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTPQQQ  120
QQQMQGVNHQ HHINNYHTVT ALAEDNERLR RSNNMLLSEL AHMKKLYNDI IYFVQNHVKP  180
VTPSSTFPSF PLPQASRNVE RPVKQFVGCY TNNTNTNTNT NTNTKQARGA NSPTNSSITI  240
VEEEHSSNRC KTKLFGVSLQ SKKRVHPEYG SNYFAASETN NKARLVVEND DLGLNLMPPS  300
STTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-222111617122Heat shock factor protein 1
5d5u_B4e-222111626131Heat shock factor protein 1
5d5v_B4e-222111626131Heat shock factor protein 1
5d5v_D4e-222111626131Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933311e-134BT093331.1 Soybean clone JCVI-FLGm-24E17 unknown mRNA.
GenBankZ469561e-134Z46956.1 G.max mRNA for heat shock transcription factor 5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503529.11e-158PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-109HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A151S0510.0A0A151S051_CAJCA; Heat stress transcription factor B-4
STRINGGLYMA14G09190.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-102heat shock transcription factor B4