PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32266
Common NameKK1_031869
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 353aa    MW: 40801.5 Da    PI: 5.3276
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32266genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.8e-34141052102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+ye+++d++ ++++sws +++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +l+++i
  C.cajan_32266  14 FLAKTYEMVDDSSSDSIVSWSVTSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPHLMKNI 100
                    9********************999****************************************9998.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  C.cajan_32266 101 HRRKP 105
                    **985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-37498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDEAQGSSSS LPPFLAKTYE MVDDSSSDSI VSWSVTSKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPL  120
GESERQSFTD EIEKLKHDKE RLLVELQRYQ HEWQTYEIQV HCSKDRLEKL EQKQRKMVSS  180
VSHVLQKPVI AVNILPLTET MERKRRLPKS SYFNDEASIE DAVETSQMLP RENAENTSVL  240
TLNMERLDQL ETSMAFWEAI AHDYSAVPEP VASKEQPAGT TVAATGVNDV FWEQFLTEDP  300
GASETQEVQS ERKDYDGRKN EGKPSDLNKF WWNIRTANNL PEQMGHVGQA EKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23910324129Heat shock factor protein 1
5d5v_B4e-23910324129Heat shock factor protein 1
5d5v_D4e-23910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526270.0AY052627.1 Phaseolus acutifolius heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580179.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotQ9FK721e-112HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A151RVE50.0A0A151RVE5_CAJCA; Heat stress transcription factor A-4c
STRINGGLYMA05G29470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-109heat shock transcription factor A4A