PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32033
Common NameKK1_033982
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26974.2 Da    PI: 9.4531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32033genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-171054246
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                   +i n+s r+ t+ kR++ +lKK eELS+LC++e++ i++s+++ l
  C.cajan_32033 10 FIANDSARKATYKKRKKSLLKKVEELSTLCGIEACAIVYSPDDPL 54
                   89***************************************9866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.133154IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-23160IPR002100Transcription factor, MADS-box
CDDcd002661.20E-22285No hitNo description
SuperFamilySSF554555.23E-23294IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-171052IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTRKKVKLSF IANDSARKAT YKKRKKSLLK KVEELSTLCG IEACAIVYSP DDPLPQVWPS  60
DNGVERVVER FRIMPELEQS KKMANQESFI GQRILKSKDQ VMKLMKDNRE KEMTMFMFRC  120
LNVGRVLPDN NMTTSDLSDL SSMIEQNLRD INKRLETLSA NEMTTNQPQV QTPALAVPKT  180
KETTLVNSGY GLDMNANPVP RQMFMDLLNG NGNQAIMPHF GDADLQLQTS FWPNLLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLSFIANDSARKATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237614.11e-176agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-53AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A151RPQ01e-175A0A151RPQ0_CAJCA; Agamous-like MADS-box protein AGL80
STRINGGLYMA18G05916.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1946255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-45AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]