PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32026
Common NameKK1_033975
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 338aa    MW: 39490 Da    PI: 6.9377
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32026genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.77e-141050242
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   +i n+s r++++ kR++ +lKK eE+S+ C++e++ i++ s
  C.cajan_32026 10 FIANDSERKISYRKRKKSVLKKTEEISTICGVEACAIVYNS 50
                   899**********************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-16161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.432151IPR002100Transcription factor, MADS-box
CDDcd002669.83E-23285No hitNo description
SuperFamilySSF554557.06E-20396IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-5323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-121051IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MARKKVKLAF IANDSERKIS YRKRKKSVLK KTEEISTICG VEACAIVYNS SYDPEPQVWP  60
SESGVQQVLR KFRSLPEWEQ MRNMVQQENF IRQSIHKQRE KVKKLAKDNK QKEMTMLMYQ  120
CLDAGRVELN NNVNVADLKD LSSVIEQKLQ SITTKLEMLN VNEITSYQPQ MQEPAHQHQM  180
QMQTPVPYQP QIGTPAYQQQ IQMQIPQNQQ QIQMQIPQNH QQIQMQIPAY QPQPQMQIQT  240
QAYQSQIETP TYQQQMQMLQ TPAYQPEVQR QTTTYVPQNE GPSNQPQMQT RALAVEPEEM  300
TLLNMNTNPM QSQWFMDTFL IGNGDETMFP PFGDDLPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSERKISYRKRK
22125RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237626.10.0MADS-box transcription factor PHERES 2
TrEMBLA0A151RPN50.0A0A151RPN5_CAJCA; Agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-46AGAMOUS-like 80