PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32024
Common NameKK1_033973
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27092.8 Da    PI: 5.4194
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32024genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.9e-161152344
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                   i n+s+r+ t+ kR+ng++KK  E+S+LC++e++ ii+ +++
  C.cajan_32024 11 IANDSKRKATLRKRKNGLIKKVDEISILCGIEACAIIYVPEN 52
                   89***********************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.834148IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-20160IPR002100Transcription factor, MADS-box
CDDcd002668.23E-31283No hitNo description
SuperFamilySSF554555.23E-22395IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MARKKVDLTY IANDSKRKAT LRKRKNGLIK KVDEISILCG IEACAIIYVP ENPTPEVWPS  60
DWGVQNVLSR FRGVSELEQS KKMLSQESFL RHRIIKAQEQ LKKLKAENRK KEMTLNIYQY  120
FNASGNIFDS ANMIYLNDIA HMTTQNLQEI DRKINRDQQP QDQEVVAPVV PEGGEIMAQQ  180
GEQAQLVNDH VQVPEANNVN AVGNQDWPVE MINGADGDQM LTMDDVNLPS GWLNQYIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTYIANDSKRKATLRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237635.11e-177agamous-like MADS-box protein AGL80
TrEMBLA0A151RPQ41e-176A0A151RPQ4_CAJCA; Agamous-like MADS-box protein AGL80
STRINGXP_007146875.17e-85(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-43AGAMOUS-like 80