PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_30373
Common NameKK1_029678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 342aa    MW: 39616 Da    PI: 5.9577
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_30373genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.97.9e-34381292102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++++++d+++++++sws++g+sfvv+d+++f++ +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+ + F +g+++ll+ i
  C.cajan_30373  38 FLTKTFDVVDDPATNHVVSWSRDGTSFVVWDPHTFSTCLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFATDGFMRGHRHLLKGI 124
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+k 
  C.cajan_30373 125 KRRKA 129
                    **985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5734127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3734127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3434127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.3E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNHTNPVKEE YLESSYQLAS EYPPKPMEGL HDTGPPPFLT KTFDVVDDPA TNHVVSWSRD  60
GTSFVVWDPH TFSTCLLPRY FKHNNFSSFV RQLNTYGFRK IDPDRWEFAT DGFMRGHRHL  120
LKGIKRRKAP AQLTRGHHNV EVGCFELDKE IDRLRHDKLV LMMEVVNLRQ QQQKAKLCIE  180
EMERRLQGTE IRQQQMMAFL ARAIKNPAFI HQLQQKEKKM ELQEALTKKR RAIEQGARGV  240
GESSSVKVEA LEFGDSEFGI SELEMLAREM QGFGKGMIDR EVGPEVLESQ ERLDRVIDEE  300
FWEELLCSEK FERGLDMPTA EDKDEDAVKV LANQLGCFDS SH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-223612718120Heat shock factor protein 1
5d5u_B2e-223612727129Heat shock factor protein 1
5d5v_B2e-223612727129Heat shock factor protein 1
5d5v_D2e-223612727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126LKGIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276249.10.0heat stress transcription factor A-6b-like
SwissprotQ6VBB21e-105HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A151S1J60.0A0A151S1J6_CAJCA; Heat stress transcription factor A-2b
STRINGGLYMA10G03530.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-95heat shock transcription factor A6B