PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29004
Common NameKK1_026979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 207aa    MW: 23170.8 Da    PI: 6.3059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29004genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000223456123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C+ C++ F++   L  H+++H
  C.cajan_29004 34 YACSFCKREFRSAQALGGHMNVH 56
                   89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-63160No hitNo description
Gene3DG3DSA:3.30.160.607.1E-43259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00923456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1983461IPR007087Zinc finger, C2H2
PfamPF139121.6E-63457IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEGNYLNRNT TPQRDDSFGF EEHTWGTSWP ARNYACSFCK REFRSAQALG GHMNVHRRDR  60
ARLRSSLSSW VSECPKPNPS TKPNPNLLPP SSSPSPLSDE PLNYAHPSPL CSPCLTLSSS  120
PSPASASGDK KPRLTPSHLL SPQSREIKMM SGLSADEEMK GCVEEEEEEE EHKGFKNNEQ  180
NITLELGIGL LKHQEEKLDL ELRLGHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-112956229superman protein
2l1o_A1e-112956229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_29004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-140AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231547.11e-151transcriptional regulator SUPERMAN
TrEMBLA0A151S8W11e-149A0A151S8W1_CAJCA; Transcriptional regulator SUPERMAN
STRINGXP_007144930.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-14C2H2 family protein