PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_29000
Common NameKK1_026975
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 463aa    MW: 50618.4 Da    PI: 5.9042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_29000genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11315361455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  C.cajan_29000 315 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 361
                    799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-4351227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-13314365No hitNo description
SuperFamilySSF474591.83E-17314379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17315381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9315361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00171395462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVGEKLCVSE EDKGVLESVL GAEAVAFFIS ALSNNVFSGV VAPSAGADVG LRHRLSQLVE  60
GSKWNYAVFW QVAGLKSGGS ALVWGDGHCS DAKGERNGVG KEDEQEVRKK VLQKLDACFA  120
GFVSKEANYA RLDKVSDLLM FYLTSMCYIF GFDLPCGPGS SFKSGKVIWA SDAAGCLNQL  180
ESRSFLGKLA GLQTVVFVPL KTGVVELGSP EMLPEEQGVV EMVRTAFGES SPGQAKVFPK  240
IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSYEVQAL GVNHGYGNSS NGTLDERKPR  300
KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITFITDL  360
QMKIKVLEAE KNMINNKDQK LSLPDMDFHD REDDTVMTVR CPLEIHPVSG VVKTFREHQI  420
VAQDSSVSTT DDKIIHTFSI RTEGGEAAAI QLKEKLEESL SKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-19512279192Transcription factor MYC3
4rqw_B3e-19512279192Transcription factor MYC3
4rs9_A3e-19512279192Transcription factor MYC3
4yz6_A3e-19512279192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296304RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594010.10.0PREDICTED: transcription factor bHLH3-like
SwissprotO234871e-156BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A151S8S80.0A0A151S8S8_CAJCA; Transcription factor bHLH3
STRINGGLYMA13G18131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-157bHLH family protein