PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28049
Common NameKK1_029828
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 183aa    MW: 21326.3 Da    PI: 8.6184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28049genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000162060455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   ++ e ErrRR+++ s++  Lr+++           +Ka+i+e A+ YI +Lq
  C.cajan_28049 20 KNLETERRRREKLSSRLLMLRSIM-----------NKATIVEDAITYIEKLQ 60
                   56689****************997...........5559***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-111375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-81577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.79E-81564No hitNo description
SMARTSM003533.0E-52265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MQRMSRKRNY DDDTREYKSK NLETERRRRE KLSSRLLMLR SIMNKATIVE DAITYIEKLQ  60
AKVQSLSHEL HRMEATSEDT AETKADEINA VEDMQNWGIQ AEVRVAQIDG NKLWVKIIIE  120
KKRGRFSKLM EALNNFGIEL IDTNLTTTKG AFLITSCIQV RDSKNDKNQT CFFTANDSCF  180
VCY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429ERRRRE
22530RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547117.13e-94PREDICTED: transcription factor DYT1-like
TrEMBLA0A151S0W51e-134A0A151S0W5_CAJCA; Transcription factor DYSFUNCTIONAL TAPETUM 1
STRINGGLYMA15G06960.29e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-26bHLH family protein