PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26851
Common NameKK1_029308
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 343aa    MW: 36970.9 Da    PI: 8.4843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26851genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12160202754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  A+eY+k+L
  C.cajan_26851 160 MAERRRRKKLNDRLYMLRSIVPNiS------KMDRASILGDAIEYLKEL 202
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.961153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17156223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9159202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-16160215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-13160207No hitNo description
CDDcd048737.88E-7272332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSSSSAMCVV PPQQRSIGFS GFKSIINSNH EEGLLLSKSN ILRPLESLPL SGAQPTLFQK  60
RAALRKNLVG NCKGKGELMG GEGGNSSDGK KKKTCSGEGG SFIDGSGLNY DSDESDENNN  120
KMEESGRNGG NSSNANSTVT GGAGDQKGKK KTGIPAKNLM AERRRRKKLN DRLYMLRSIV  180
PNISKMDRAS ILGDAIEYLK ELLQRISDLH NELEATPAGS LLTPASSSFH HPLTPTLPPR  240
MQEELCLSSL PCPNGQPARV EVGLREGGAV NIHMFCDRKP GLLLSTMRAL DNLGLDIHQA  300
VISYFNGFVM DIFRAQQCNE GQDVHPEQIK AVLLDSAGFN SMA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148167KKKTGIPAKNLMAERRRRKK
2161168ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932251e-167FJ393225.1 Glycine max inducer of CBF expression 3 (ICE3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579339.11e-169PREDICTED: inducer of CBF expression 3 isoform X1
SwissprotQ9LSE21e-111ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A151S2I00.0A0A151S2I0_CAJCA; Transcription factor ICE1
STRINGGLYMA05G38530.21e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-106bHLH family protein