PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23529
Common NameKK1_024216
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 204aa    MW: 23064.8 Da    PI: 5.0993
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23529genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.53.8e-3491251128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGf F+Ptdeelv ++L+ k++   ++   +i+e+d+ +++Pw+L+ k+ ++ ++ yfF+k         ++nr+t++gyWk+ g +++++s  
  C.cajan_23529   9 LPPGFCFSPTDEELVLHFLRSKASLPCHPN--IIPELDLSHLDPWKLNGKALSSGNQHYFFTKV--------KENRSTENGYWKEIGVTEPIVS-A 93 
                    79********************98776555..8**************97777788999***986........45899*****************.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    +e+vg kk Lvf +g+ap+g++t+Wvm+ey++
  C.cajan_23529  94 SEKVGFKKYLVFNHGEAPQGTETSWVMQEYHI 125
                    999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-413159IPR003441NAC domain
PROSITE profilePS5100539.4029159IPR003441NAC domain
PfamPF023659.9E-2110125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MMACGSVNLP PGFCFSPTDE ELVLHFLRSK ASLPCHPNII PELDLSHLDP WKLNGKALSS  60
GNQHYFFTKV KENRSTENGY WKEIGVTEPI VSASEKVGFK KYLVFNHGEA PQGTETSWVM  120
QEYHICSSGF TTASCGSTRG RRKPDQSRSK WVLCKAYEKK SSQSQQGVNF YNDDENDSGT  180
ELSWLDEFYM TLDDDLEEVI SMPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-3231619170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23529
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-95AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215877.11e-154NAC domain-containing protein 104
SwissprotQ8GWK62e-53NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A151TLC81e-152A0A151TLC8_CAJCA; NAC domain-containing protein 68
STRINGGLYMA05G32590.21e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-56xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]