PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22870
Common NameKK1_023543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 194aa    MW: 22503.9 Da    PI: 4.6391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22870genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.51.6e-3391291128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ ++ ae k+wy++s+r         +nr+t++g W   g +++v+++ 
  C.cajan_22870   9 LPPGFRFYPTDEELVVHFLQRKANLLPCHP-DVIPDLELYPYDPWELHGRALAEGKQWYYYSRRT--------QNRVTSNGHWMPMGMEEPVITSs 95 
                    79*************************999.99**************97777889*******984........58****************99886 PP

            NAM  96 kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                    +++ vg+kk  vf+ g+ap+ g+ t+W+m+eyrl
  C.cajan_22870  96 SNKRVGMKKYYVFHVGEAPDaGNTTNWIMQEYRL 129
                    7788**********99887537899*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-456159IPR003441NAC domain
PROSITE profilePS5100543.7419160IPR003441NAC domain
PfamPF023652.1E-2110129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGDNNNVNLP PGFRFYPTDE ELVVHFLQRK ANLLPCHPDV IPDLELYPYD PWELHGRALA  60
EGKQWYYYSR RTQNRVTSNG HWMPMGMEEP VITSSSNKRV GMKKYYVFHV GEAPDAGNTT  120
NWIMQEYRLL DSASSSRSSR RRSQPKPDHS KWVICRVYER DNDDDDDDGD GTELSCLDEV  180
FLSLDDLDEI SLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-39516213167NO APICAL MERISTEM PROTEIN
1ut4_B9e-39516213167NO APICAL MERISTEM PROTEIN
1ut7_A9e-39516213167NO APICAL MERISTEM PROTEIN
1ut7_B9e-39516213167NO APICAL MERISTEM PROTEIN
3swm_A9e-39516216170NAC domain-containing protein 19
3swm_B9e-39516216170NAC domain-containing protein 19
3swm_C9e-39516216170NAC domain-containing protein 19
3swm_D9e-39516216170NAC domain-containing protein 19
3swp_A9e-39516216170NAC domain-containing protein 19
3swp_B9e-39516216170NAC domain-containing protein 19
3swp_C9e-39516216170NAC domain-containing protein 19
3swp_D9e-39516216170NAC domain-containing protein 19
4dul_A9e-39516213167NAC domain-containing protein 19
4dul_B9e-39516213167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222903.11e-144NAC domain-containing protein 104
SwissprotQ8GWK61e-86NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A151T2751e-143A0A151T275_CAJCA; NAC domain-containing protein 19
STRINGGLYMA08G08010.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-82xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]