PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19733
Common NameKK1_020315
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 191aa    MW: 22469.1 Da    PI: 10.0186
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19733genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161151343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+s+r++tf kR+ g++KK +E+S+LC++e++ ii+ ++
  C.cajan_19733 11 ITNDSKRKTTFKKRKIGLIKKMNEISTLCGIEACAIIYNPN 51
                   89***********************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.876151IPR002100Transcription factor, MADS-box
CDDcd002666.39E-21285No hitNo description
SuperFamilySSF554553.92E-23293IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-171152IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTRKKVDLTY ITNDSKRKTT FKKRKIGLIK KMNEISTLCG IEACAIIYNP NDPQPEVWPS  60
DAGVQMVLSR FRRMSELKQN KKMLNQESLL KQIVIKSQEQ LKRLRSENRK KEMSHLIFQY  120
LTIGGIFDNP SLIDLNDISW LIDHNLNEIE KKINRIQIQE VTPMIENEGE RGFMHHVQGL  180
ESDMNTFQRQ H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTYITNDSKRKTTFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19733
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211435.11e-140agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-44AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A151U9Y81e-139A0A151U9Y8_CAJCA; Agamous-like MADS-box protein AGL80
STRINGXP_007146871.14e-95(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-47AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]