PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18525
Common NameKK1_019067
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 131aa    MW: 14268.3 Da    PI: 8.7784
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18525genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.2e-3827116189
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                    +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +
  C.cajan_18525  27 PCGACKFLRRKCVPGCIFAPYFDSEQgATHFAAVHKVFGASNVSKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVIH 116
                    7***********************9989***********************************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.33726128IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-3827116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MSINSSCSGG NNSNNNNGGG NSSGGSPCGA CKFLRRKCVP GCIFAPYFDS EQGATHFAAV  60
HKVFGASNVS KLLLNIPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVIHNNRL  120
INWWVNWLMI C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354101e-102AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139994.13e-61hypothetical protein PHAVU_008G075900g
SwissprotO221311e-54LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A151TBP81e-93A0A151TBP8_CAJCA; LOB domain-containing protein 18
STRINGGLYMA03G02620.11e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.16e-55LOB domain-containing protein 18