PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18348
Common NameKK1_018883
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 222aa    MW: 23528.5 Da    PI: 7.5027
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18348genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16.1e-38231231100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrr+Ca++C++apyf  eq +++fa+vhk+FGasnv+kll ++p + r da+ +++yeA+ r+rdP+yG+v++i++lqqq ++l+ael+
  C.cajan_18348  23 PCGACKFLRRRCAPSCIFAPYFDTEQgTARFAAVHKVFGASNVSKLLFNIPANIRLDAVITICYEAQSRLRDPIYGCVAHIFALQQQAANLQAELS 118
                    7**********************99989******************************************************************** PP

         DUF260  96 llkee 100
                    +l+ +
  C.cajan_18348 119 YLHGH 123
                    99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4622124IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3723120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDSESSDNNS GSSNGGGRHS SSPCGACKFL RRRCAPSCIF APYFDTEQGT ARFAAVHKVF  60
GASNVSKLLF NIPANIRLDA VITICYEAQS RLRDPIYGCV AHIFALQQQA ANLQAELSYL  120
HGHLAQMEVS HPPPTPPPQQ AAAPPVFSMA DLPATTMAAA IPVTYDLSSL FEPMGQSSWA  180
MQQRGMDPRH FMGGGAPSTT TTQSPPTAPS SSNASPSLSL SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534608.13e-86PREDICTED: LOB domain-containing protein 18-like
SwissprotO221316e-66LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A151TB691e-164A0A151TB69_CAJCA; LOB domain-containing protein 18
STRINGGLYMA09G40500.19e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.13e-58LOB domain-containing protein 18