PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18343
Common NameKK1_018878
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 223aa    MW: 23367.4 Da    PI: 8.1512
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18343genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.6e-39231231100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p+++r da+ +++yeA+ r+rdPvyG+v++i++lqqq+++l+ael+
  C.cajan_18343  23 PCGACKFLRRKCVSSCIFAPYFDSEQgTAHFAAVHKVFGASNVSKLLLNIPTNRRLDAVITICYEAQSRLRDPVYGCVAHIFALQQQVANLQAELS 118
                    7***********************9989******************************************************************** PP

         DUF260  96 llkee 100
                    +l+ +
  C.cajan_18343 119 YLHGH 123
                    99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.91422124IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-3923120IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNSGSGGNNN GGGGSGGGHT GSPCGACKFL RRKCVSSCIF APYFDSEQGT AHFAAVHKVF  60
GASNVSKLLL NIPTNRRLDA VITICYEAQS RLRDPVYGCV AHIFALQQQV ANLQAELSYL  120
HGHLTHIEVP HPSPPPTPQP TAPPLFSIAD LPATATAPAI PVTYDLSSLF EPMGQSSWAM  180
QQRGMDPRHY MGGGAPSTTI TQSPPTAPSS SNSSPLPSLS LSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139994.13e-92hypothetical protein PHAVU_008G075900g
SwissprotO221311e-68LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A151TB811e-164A0A151TB81_CAJCA; LOB domain-containing protein 18
STRINGGLYMA09G40500.13e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-66LOB domain-containing protein 18