PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_17927
Common NameKK1_018458
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 223aa    MW: 24814.3 Da    PI: 6.3404
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_17927genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.78.2e-38261271101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk++r+kC++dC++apyf +++  ++f +vhk+FGasnvlk+l +++ ++r++am+s+++eA+ar+ dPv+G+++++  lqqq+++l+ ela
  C.cajan_17927  26 PCGACKYQRKKCTNDCMFAPYFGSDHgLAQFTIVHKIFGASNVLKMLLDVEVNRRQEAMRSILFEAQARLIDPVNGCLSTMIGLQQQVASLQGELA 121
                    7*********************999978******************************************************************** PP

         DUF260  96 llkeel 101
                    ++k++l
  C.cajan_17927 122 MVKNQL 127
                    **9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.60325127IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3626124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSGGDGTSSV TKCKAKHAML EVSSPPCGAC KYQRKKCTND CMFAPYFGSD HGLAQFTIVH  60
KIFGASNVLK MLLDVEVNRR QEAMRSILFE AQARLIDPVN GCLSTMIGLQ QQVASLQGEL  120
AMVKNQLINT KILYEELFNS TYQQQQQLQP NINVAGQPYS NNSPASTNFM NMNGFNSNFD  180
HLGMQTTPLT DNLKPLQFSE LPQNEEENMI LQVSNNDMTH LLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-262612911113LOB family transfactor Ramosa2.1
5ly0_B3e-262612911113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_17927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218452.11e-167LOB domain-containing protein 20
SwissprotQ9SRV38e-49LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A151TA051e-165A0A151TA05_CAJCA; LOB domain-containing protein 20
STRINGXP_007162000.14e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-49LOB domain-containing protein 20