PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_15712
Common NameKK1_016174
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20094.1 Da    PI: 9.2426
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_15712genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65e-211257449
                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   ++   rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs  +k y +
  C.cajan_15712 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEIAILVFSIGNKPYSF 57
                   66778*********************************98887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.24E-27174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.254161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-32160IPR002100Transcription factor, MADS-box
CDDcd002652.10E-32272No hitNo description
PRINTSPR004041.5E-19323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRRKIEIAT VKDPNTRQVT FSKRRTGLFK KANELSILCG AEIAILVFSI GNKPYSFGHP  60
SVEAVVAKYL PHATLSNDVQ QNNPSNEFGD IDGLNQQLSK VQAQILDEEK KGAELDEMLK  120
QLQVTQLSQC KELQGSFLKL QCRVKDYIDA IQVSECMMLL AQGPQIGITN QVTTKKRRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A6e-19179183MEF2 CHIMERA
6bz1_B6e-19179183MEF2 CHIMERA
6bz1_C6e-19179183MEF2 CHIMERA
6bz1_D6e-19179183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_15712
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221887.11e-131agamous-like MADS-box protein AGL29
TrEMBLA0A151T3N81e-130A0A151T3N8_CAJCA; Agamous-like MADS-box protein AGL61
STRINGGLYMA05G35820.13e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-35AGAMOUS-like 29