PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_15710
Common NameKK1_016172
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20314.2 Da    PI: 8.2041
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_15710genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221257449
                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   +n   rqvtfskRr+g++KKA+ELS+LC++e+a+++fs+ +k y +
  C.cajan_15710 12 KNPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSPGNKPYSF 57
                   78889**********************************9998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-27171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.212161IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-35160IPR002100Transcription factor, MADS-box
CDDcd002653.24E-32276No hitNo description
PRINTSPR004046.1E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRRKIEIVM VKNPNTRQVT FSKRRTGLFK KANELSILCG VEIAIVVFSP GNKPYSFGHP  60
SVDVVAAKFL QQESDSNDDA QENNPFNEAA QIHTLNQQLC DVQAQIREEE KKGAKLDEGL  120
EQYQVTQPSQ SQYKELQDSF LKLQCRVKDC LDAIEVSECM MLLRQEPVVG ITRRRRKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-18183187MEF2 CHIMERA
6byy_B6e-18183187MEF2 CHIMERA
6byy_C6e-18183187MEF2 CHIMERA
6byy_D6e-18183187MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_15710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221917.11e-130agamous-like MADS-box protein AGL29
TrEMBLA0A151T3P01e-129A0A151T3P0_CAJCA; Agamous-like MADS-box protein AGL61
STRINGGLYMA05G35820.12e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-40AGAMOUS-like 29