PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13224
Common NameKK1_013633
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 272aa    MW: 29277.6 Da    PI: 8.484
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13224genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-3141081100
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++
  C.cajan_13224   4 SCNGCRVLRKGCTQDCSIRPCLqwiknPESQANATVFLAKFYGRAGLINLVNAGPQHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAA 99 
                    6*********************************************************************************************** PP

         DUF260  92 aelallkee 100
                    +e++l +e+
  C.cajan_13224 100 VEAVLKGEP 108
                    **9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6533109IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTQDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL INLVNAGPQH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGEPIT PITSEAAANG  120
QAPPLKPYDI RHVSKDESPA NETKRVKTRS KRAAGSLIKP KASKGTRFAA TEPETASHES  180
GLSHLSEAAA AMMVEGESKE SESVVSAETS NLFRDEAEAV EAGGRTGEVG LELTLGLEPV  240
SRACHVVPVK KRRIELGEKL ACKMELGLEY SA
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217488.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-110LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A151TJT70.0A0A151TJT7_CAJCA; LOB domain-containing protein 41
STRINGGLYMA13G07590.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-98LOB domain-containing protein 41