PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12990
Common NameKK1_013391
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 281aa    MW: 31390.7 Da    PI: 9.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12990genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-1197143455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR++i + f  L  l+P +     kK++Ka++L  A++++k+Lq
  C.cajan_12990  97 DHIIAERKRREKISQQFIALSALIPGL-----KKMDKASVLGDAIKHVKELQ 143
                    599************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.86993142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1697157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1798161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-998143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-1198147No hitNo description
SMARTSM003536.9E-1499148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSNSSQDDKN KIFGESPANT LKTGTSNSAN TEYLSQKNDS SLSYILSFDN VVNPAPVLNI  60
DSTTMKPKDG KVARNQNKEP KNNNSVSLSR SPLHARDHII AERKRREKIS QQFIALSALI  120
PGLKKMDKAS VLGDAIKHVK ELQEQVKLLE EQNKRKRVES MVYVEKSKLS WDEDVSDTSS  180
NSGDGNSYGP SKTNASSLPE VEARVSEKHV LIRIHCDKQR GLFMNILKEV ENLHLSVMNS  240
SILLFGTSKL DITIVAEMEQ EFGLSVKELA RNLRVGLMQF M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106ERKRRE
2102107RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102779e-37AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573685.11e-133PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0722e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A151TJ500.0A0A151TJ50_CAJCA; Transcription factor bHLH25
STRINGGLYMA01G40611.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-50bHLH family protein