PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12868
Common NameKK1_013261, KK1_023650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 335aa    MW: 38294.7 Da    PI: 9.289
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12868genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.4e-191060250
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeys 50
                    ie +  r++tf kR+ng++KKA+E  +LC+++v vii++++   +l +++
  C.cajan_12868 10 LIEKEKSRKTTFHKRKNGLMKKAYEFATLCGVDVGVIIYAPDflKELETWP 60
                   69999************************************9667888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-21161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.525149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-21396IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-10323IPR002100Transcription factor, MADS-box
CDDcd001206.39E-23351No hitNo description
PfamPF003195.5E-201151IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-102338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVRGRIAMKL IEKEKSRKTT FHKRKNGLMK KAYEFATLCG VDVGVIIYAP DFLKELETWP  60
QDSEEIKRVI QKLQNTTRDR CPKVYDVEEY FSERMKKIEG EISKVHKAKI KVMYPTWDDS  120
YNTLGEEQLR RFVGILDAKL DACNRRMNML KRDSKGKAKA ESDTAEILTP YMASNLGSHM  180
NFMQNMSQAQ IFYPMKSTSD NNQVALYPFQ LGQSSKSSMF HFGPNCTQLM GKNGMVDWAN  240
QVGVVACDPK KGILEEDVSQ KSHNSSPCYS NGNIQTMQPY NVSLQTLPSQ LQYNATFQTL  300
PRQPGPPPGS QLNDSYDSNM LQRQYFYYMH GGPST
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12868
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216886.10.0floral homeotic protein AGAMOUS
RefseqXP_020222130.10.0floral homeotic protein AGAMOUS
TrEMBLA0A151TIU90.0A0A151TIU9_CAJCA; MADS-box transcription factor PHERES 2
STRINGGLYMA05G27105.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-25M-type_MADS family protein