PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11925
Common NameKK1_012289
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 423aa    MW: 48163.9 Da    PI: 9.5999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11925genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.1e-16696198
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                   f k l+ps   + ++l+lp +f++++gg+   s  +tl  ++g +W+v l  +k +++y++ +GW+eF +   + +g  +vF ++g+s+f  +v++f+
  C.cajan_11925  6 FHKLLLPSTL-QPNQLRLPDNFMRKYGGE--ISPIVTLSVPDGSVWRVGL--KKADNKYWFIDGWQEFIQRYAIGVGYLLVFGFEGKSSF--NVRIFN 96
                   5566655555.5566***********877..6668***************..********************************999999..888875 PP

2B356.26.1e-18293383498
                    E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l v+vfr
  C.cajan_11925 293 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISTGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFR 383
                    78899******************877743...5***************665555..66***********************998888889999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-22296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-22396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-17496No hitNo description
PROSITE profilePS5086312.605598IPR003340B3 DNA binding domain
SMARTSM010192.4E-15698IPR003340B3 DNA binding domain
PfamPF023623.4E-13695IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-24282383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24283384IPR015300DNA-binding pseudobarrel domain
CDDcd100176.24E-22288383No hitNo description
SMARTSM010194.3E-15290385IPR003340B3 DNA binding domain
PROSITE profilePS5086313.62290385IPR003340B3 DNA binding domain
PfamPF023621.7E-15293383IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPHPSFHKLL LPSTLQPNQL RLPDNFMRKY GGEISPIVTL SVPDGSVWRV GLKKADNKYW  60
FIDGWQEFIQ RYAIGVGYLL VFGFEGKSSF NVRIFNLATS EINYQSATRS SNEGPYFANR  120
VKIFEEMEDE DSIEILDSSP SHLASQNKAL AGSVDKMTPG KSYTPALQNL FNGSKLNSIN  180
WGEGGNAHSL RSASDNRMTR DIGVQFNAVE FKRSTEELKL RASIEERIKK TARKKRKSEG  240
QDPSAEHEEE VEMRFRFYES ASARKRTATA EERERAINMA KAFEPPNPFC RVVLRPSYLY  300
RGCIMYLPSC FAEKHLNGVS GFIKLQISTG RQWPVRCLYR GGRAKLSQGW FEFSLENNLG  360
EGDVCVFELL RMKEVVLQVT VFRITEDVGL LSPPLQQNQN MNTPKLLNNP LQQHLTSTKL  420
IRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-7125638815146B3 domain-containing transcription factor VRN1
4i1k_B9e-7125638815146B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11925
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351721e-177AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217076.10.0B3 domain-containing transcription factor VRN1 isoform X1
SwissprotQ8L3W11e-128VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A151TG430.0A0A151TG43_CAJCA; B3 domain-containing transcription factor VRN1
STRINGXP_007131905.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-116B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]