PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09684
Common NameKK1_009958
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 169aa    MW: 18694.6 Da    PI: 4.6288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09684genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1769118355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr ++ +g+++AeIrd + ng   r+++g+f tae Aa a+++a+++ +g
  C.cajan_09684  69 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFETAEAAALAYDQAALSTRG 118
                    9*******.**********44465..**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.5E-3068127IPR001471AP2/ERF domain
PROSITE profilePS5103222.77468126IPR001471AP2/ERF domain
SMARTSM003801.4E-3368132IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2168127IPR016177DNA-binding domain
PRINTSPR003671.7E-106980IPR001471AP2/ERF domain
PfamPF008474.5E-1269118IPR001471AP2/ERF domain
CDDcd000189.28E-1869127No hitNo description
PRINTSPR003671.7E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDLELDSTFF LNQNPNLFSS VSGDPFSWDY HFALDDIFNS SSRSSVESNE VSSDEKAKEG  60
EAAKGRRMYR GVRKRPWGKF AAEIRDSTRN GVRVWIGTFE TAEAAALAYD QAALSTRGSM  120
AVLNFPEEVK KSKSKSTSTS TSEQLGQNVL VLEDLGADYL EQLLTLTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2863129166ATERF1
3gcc_A4e-2863129166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09684
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213644.14e-84ethylene-responsive transcription factor 15
SwissprotA0A3Q7I5Y94e-38ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A151TUH41e-120A0A151TUH4_CAJCA; Ethylene-responsive transcription factor 15
STRINGGLYMA03G31940.11e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.16e-24ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]