PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08183
Common NameKK1_008428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 243aa    MW: 26494.5 Da    PI: 7.2038
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08183genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.35.4e-38471471100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC  +C++ap+f  +q ++kfa+vhk+FGasnv+kll+++p + r++a++++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+
  C.cajan_08183  47 PCGACKFLRRKCIGGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLHSIPANLRHEAATTISYEAQARLSDPVYGCVSTILALQQQVASLQAELS 142
                    7***********************9989******************************************************************** PP

         DUF260  96 llkee 100
                    + +++
  C.cajan_08183 143 MFQTQ 147
                    99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.9746148IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3847145IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAERSNDSGD NDNSSASGSR RRGATSRRVI TTTLQEEAFV VPSPVTPCGA CKFLRRKCIG  60
GCIFAPHFGT DQGAAKFAAV HKVFGASNVS KLLHSIPANL RHEAATTISY EAQARLSDPV  120
YGCVSTILAL QQQVASLQAE LSMFQTQLMN SRFAYASALQ TTQMQQPNMN AAALQPTYSN  180
NSCASTNLMN LSNFNTNNSG FNLAMETAPS SHSLEPLQLS RLSQYEEEDE EESRIHQAFN  240
HRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-374715411115LOB family transfactor Ramosa2.1
5ly0_B2e-374715411115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-95AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211040.10.0LOB domain-containing protein 20
SwissprotQ9SRV31e-73LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A151TQF31e-180A0A151TQF3_CAJCA; LOB domain-containing protein 20
STRINGGLYMA10G11031.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-56LOB domain-containing protein 20