PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05797
Common NameKK1_005942
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 483aa    MW: 53961.9 Da    PI: 6.574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05797genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68e-17279325455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  C.cajan_05797 279 VHNLSERRRRDRINEKMRALQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 325
                    6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.3E-19272332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-20272338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.463275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-18278329No hitNo description
PfamPF000103.0E-14279325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MNNSIRGWDF ESDTCLNNQR KLVRPDQEFV ELLWQNGQVV MHSQTHKQPV GNSSNLRQVQ  60
KTDQSTLRTS GPYENSSKLD QENAAPWIQY PFEDPSEQEF CSNLLPELPP CEVESYKPIR  120
QMEEGKNANF FASSAPHLTS ISQPLPPNMK PSTSQKTSAN TSQGEAGEYS VITVGSSHCG  180
SNNIPQDQDV SRISSNVHRS DKGKSEMIEP TVTSSSGRSG STGIGRTCSL STRDHGLKRK  240
GTEEEASEEQ SEATELKSAD ENKTSQRTGS SRRNRAAEVH NLSERRRRDR INEKMRALQQ  300
LIPNSNKTDK ASMLEEAIEY LKSLQFQLQV MWMGTGMTPI MFPGIQHYMS QMGLVAPSLP  360
SIHNHMQFPK LAHDQTQMPN QTLMCQNPVL GAFNYQNQMQ NPCLSEQYAR YMGYHLMQSP  420
SQAMNASRYG SEAVQHSQTM IAPTNNSSGP MSGTANVDDA VSGKTSKPLD TFNLFLDFYS  480
QQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-31AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575634.10.0PREDICTED: transcription factor PIF4
RefseqXP_014625858.10.0PREDICTED: transcription factor PIF4
TrEMBLA0A151U1W50.0A0A151U1W5_CAJCA; Transcription factor PIF4
STRINGGLYMA02G45150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.23e-62phytochrome interacting factor 4