PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04992
Common NameKK1_005114
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family M-type_MADS
Protein Properties Length: 50aa    MW: 5868.04 Da    PI: 12.09
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04992genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.6e-14933125
                   S---SHHHHHHHHHHHHHHHHHHHH CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                   krien +nrqvtfskRrng++KKA+
  C.cajan_04992  9 KRIENPTNRQVTFSKRRNGLIKKAY 33
                   79**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.867150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-14133IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-11150IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-14323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-121033IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-142338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
MGRVKLEIKR IENPTNRQVT FSKRRNGLIK KAYFIFLATN FNSVAKIVKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LM468e-15AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A151TZW31e-26A0A151TZW3_CAJCA; Agamous-like MADS-box protein AGL11
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-17AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]