PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04249
Common NameKK1_004353
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 297aa    MW: 33074.4 Da    PI: 6.5031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04249genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38e-184997355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  C.cajan_04249 49 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 97
                   56******.**********965...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.58748105IPR001471AP2/ERF domain
SMARTSM003807.3E-3348111IPR001471AP2/ERF domain
CDDcd000181.09E-2848104No hitNo description
Gene3DG3DSA:3.30.730.102.5E-2849105IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2049106IPR016177DNA-binding domain
PRINTSPR003679.9E-84960IPR001471AP2/ERF domain
PfamPF008472.5E-115197IPR001471AP2/ERF domain
PRINTSPR003679.9E-87187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSTSRTSDTP FKGYDPNNQT QMCLSLLQRN TSPCGERRGR RKQAEPGRFL GVRRRPWGRY  60
AAEIRDPTTK ERHWLGTFDT AQEAALAYDR AALSMKGSQA RTNFVYSDNI NFHTLLSPVD  120
VQLQVQVQPL LPPSHFLTNT NTTQAKQPTN HNSLSQVTHA PNCGNPSPMN NIETTHGSAQ  180
DDDFFFSSDS NSGYLECIVP DNCFRPSSSS RKSNVKMAPR ESNYSDFYYP SEGSWDWNSS  240
ELSAIFKNPL RVEDGCMDAF NDSPSYGVMN QGASSTSTNC SPSLPSFGDV DLGYPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2039111578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04249
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225497.10.0ethylene-responsive transcription factor ERF086
SwissprotQ6J9Q29e-55ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A151STI70.0A0A151STI7_CAJCA; Ethylene-responsive transcription factor ERF086 family
STRINGXP_007154243.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.19e-50ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRĂ–SCHEN, DORNRĂ–SCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]